CO on Ni 111 surface: Difference between revisions

Latest revision as of 09:55, 14 November 2019

Overview > Ni 100 surface relaxation > Ni 100 surface DOS > Ni 100 surface bandstructure > Ni 111 surface relaxation > CO on Ni 111 surface > Ni 111 surface high precision > partial DOS of CO on Ni 111 surface > vibrational frequencies of CO on Ni 111 surface > STM of graphite > STM of graphene > collective jumps of a Pt adatom on fcc-Pt (001): Nudged Elastic Band Calculation > List of tutorials

Task

Adsorbtion of a CO molecule at the top site of a Ni (111) surface.

Input

POSCAR

Ni - (111) + CO on-top
  3.53
   .70710678  .0000000  .000000
 -0.35355339 0.6123724  .000000
   .000000    .000000  5.1961524
    5 1 1
selective dynamics
direct
   .00000000   .00000000   .00000000  F  F  F
   .33333333   .66666667   .11111111  F  F  F
   .66666667   .33333333   .22222222  F  F  F
   .00000000   .00000000   .33333333  T  T  T
   .33333333   .66666667   .44444444  T  T  T
   .33333333   .66666667   .54029062  T  T  T
   .33333333   .66666667   .60298866  T  T  T

CO molecule put above surface atom "on-top".
$z_{\mathrm{C}}=(.540-.444)\cdot 5.196 \cdot 3.53 \approx 1.76$ $\AA$ .
$d_{\mathrm{CO}}=(.603-.540)\cdot 5.196 \cdot 3.53 \approx 1.16$ $\AA$ .

INCAR

  ISTART = 0
  ICHARG = 2
     
general:
  SYSTEM = CO adsorption on Ni(111)
  ENMAX  = 400
  ISMEAR =    2  ; SIGMA = 0.2
  ALGO= Fast
  EDIFF = 1E-6
    
dynamic:
  NSW=100
  POTIM = 0.2
  IBRION = 1

KPOINTS

K-Points
0
Monkhorst-Pack
9 9 1
0 0 0

Calculation

Two additional atom types (C and O) in the calculations: append C and O potentials to the POTCAR file.

The sample output for the forces should look like the following:

POSITION                                       TOTAL-FORCE (eV/Angst)
-----------------------------------------------------------------------------------
     0.00000      0.00000      0.00000         0.000000      0.000000      0.175780
     0.00000      1.44112      2.03805         0.000000      0.000000     -0.104008
     1.24804      0.72056      4.07609         0.000000      0.000000     -0.036305
     0.00000      0.00000      6.10852         0.000000      0.000000     -0.083336
     0.00000      1.44112      8.15366         0.000000      0.000000      0.009539
     0.00000      1.44112      9.90873         0.000000      0.000000      0.011228
     0.00000      1.44112     11.06339         0.000000      0.000000      0.027102
-----------------------------------------------------------------------------------
   total drift:                               -0.000093     -0.000213      0.019852

Small outward relaxation of surface due to adsorption: Failed to parse (Conversion error. Server ("cli") reported: "[INVALID]"): {\displaystyle \Delta d_{12} = (8.154-6.109)/2.038 = 0.4 % } .

CO geometry change: $d_{\mathrm{CO}} = 11.063 - 9.909 = 1.155$ $\AA$ ; $z_{\mathrm{C}} = 9.909 -8.154 = 1.755$ $\AA$ .

Visualize the structure using p4vasp:

Download

COonNi111_rel.tgz

Overview > Ni 100 surface relaxation > Ni 100 surface DOS > Ni 100 surface bandstructure > Ni 111 surface relaxation > CO on Ni 111 surface > Ni 111 surface high precision > partial DOS of CO on Ni 111 surface > vibrational frequencies of CO on Ni 111 surface > STM of graphite > STM of graphene > collective jumps of a Pt adatom on fcc-Pt (001): Nudged Elastic Band Calculation > List of tutorials

Back to the main page.

@@ Line 1: / Line 1: @@
-Description: adsorb a CO molecule at the top site of a Ni (111) surface.
+{{Sur_sci - Tutorial}}
-----
+== Task ==
-*INCAR
+Adsorbtion of a CO molecule at the top site of a Ni (111) surface.
-<pre>
-   ISTART = 0
-   ICHARG = 2
- general:
-   SYSTEM = CO adsorption on Ni(111)
-   ENMAX  = 400
-   ISMEAR =    2  ; SIGMA = 0.2
-   ALGO= Fast
- dynamic:
-   NSW=100
-   POTIM = 0.2
-   IBRION = 1
-</pre>
-*KPOINTS
+== Input ==
-<pre>
-K-Points
-Monkhorst-Pack
-9 1
-0 0
-</pre>
-*POSCAR
+=== {{TAG|POSCAR}} ===
 <pre>
 Ni - (111) + CO on-top
@@ Line 46: / Line 24: @@
     .33333333   .66666667   .60298866  T  T  T
 </pre>
+*CO molecule put above surface atom "on-top".
+*<math>z_{\mathrm{C}}=(.540-.444)\cdot 5.196 \cdot 3.53 \approx 1.76</math> <math>\AA</math>.
+*<math>d_{\mathrm{CO}}=(.603-.540)\cdot 5.196 \cdot 3.53 \approx 1.16</math> <math>\AA</math>.
+=== {{TAG|INCAR}} ===
+   {{TAGBL|ISTART}} = 0
+   {{TAGBL|ICHARG}} = 2
+ general:
+   {{TAGBL|SYSTEM}} = CO adsorption on Ni(111)
+   {{TAGBL|ENMAX}}  = 400
+   {{TAGBL|ISMEAR}} =    2  ; {{TAGBL|SIGMA}} = 0.2
+   {{TAGBL|ALGO}}= Fast
+   {{TAGBL|EDIFF}} = 1E-6
+ dynamic:
+   {{TAGBL|NSW}}=100
+   {{TAGBL|POTIM}} = 0.2
+   {{TAGBL|IBRION}} = 1
+=== {{TAG|KPOINTS}} ===
+<pre>
+K-Points
+Monkhorst-Pack
+9 1
+0 0
+</pre>
+== Calculation ==
+*Two additional atom types (C and O) in the calculations: append C and O potentials to the {{TAG|POTCAR}} file.
+*The sample output for the forces should look like the following:
+ POSITION                                       TOTAL-FORCE (eV/Angst)
+ -----------------------------------------------------------------------------------
+.00000      0.00000      0.00000         0.000000      0.000000      0.175780
+.00000      1.44112      2.03805         0.000000      0.000000     -0.104008
+.24804      0.72056      4.07609         0.000000      0.000000     -0.036305
+.00000      0.00000      6.10852         0.000000      0.000000     -0.083336
+.00000      1.44112      8.15366         0.000000      0.000000      0.009539
+.00000      1.44112      9.90873         0.000000      0.000000      0.011228
+.00000      1.44112     11.06339         0.000000      0.000000      0.027102
+ -----------------------------------------------------------------------------------
+    total drift:                               -0.000093     -0.000213      0.019852
+*Small outward relaxation of surface due to adsorption: <math> \Delta d_{12} = (8.154-6.109)/2.038 = 0.4 % </math>.
+*CO geometry change: <math> d_{\mathrm{CO}} = 11.063 - 9.909 = 1.155 </math> <math>\AA</math>; <math> z_{\mathrm{C}} = 9.909 -8.154 = 1.755 </math> <math> \AA</math>.
+*Visualize the structure using p4vasp:
+[[File:Fig CO on Ni111 1.png|500px]]
 == Download ==
-[http://www.vasp.at/vasp-workshop/examples/COonNi111_rel.tgz COonNi111_rel.tgz]
+[[Media:COonNi111_rel.tgz| COonNi111_rel.tgz]]
+{{Sur_sci}}
-----
+Back to the [[The_VASP_Manual|main page]].
-[[VASP_example_calculations|To the list of examples]] or to the [[The_VASP_Manual|main page]]
 [[Category:Examples]]